Basic Information
VIS ID
TVIS30000574
Fusion event
HIV-CIAO3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
786079/736079 (Hg38)
End
786079/736079 (Hg38)
Orient
+
Location type
Intronic
Target gene
CIAO3
Nearest miRNA
hsa-mir-3176/Upstream/192713; hsa-mir-11401/Downstream/34104;
Nearest TSS
ENST00000527434/Upstream/1841; ENST00000569566/Downstream/291;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1045, chr16-CpG: 21/Downstream/991
Upstream sequence
CCCGGAGAGAGTGCCTTAATATTATCAGCTAAAAAGTACAAGGAGTTGGTCAGCCCCAGCTTAGAGAAAGTGCACAGTCAGAATGCAGACGTGTTCTGTG
Downstream sequence
AGAAGGCCCTGCTCTCAAATGTCAAATCAAAACTTCAGGCTGAGGTCACAGAGGGAATAAAGTTTCTGTAGCGCTGAAGTTCAGGGCTGGGTAGCGTGTC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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