Fusion event
HIV-IFT140 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
End
1631105/1581104 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-3176/Upstream/810827; hsa-mir-11401/Downstream/153881;
Upstream sequence
aggctctgaggcacagggaactgtcgtggccacggctagcagtggcagtgcGTGCGGGTCCTGGGCTGATGTGGAGACTCCATGCTGGGCTCTGGGCTCC
Downstream sequence
CTGCCCTTCACCCCTCCCATCTGGCAGCTGGTGCTCCCAGCAGCACAGCATCTATGACAACACACCCAGTTAAGCAAATGTTTGCTCATTTTAGGTGGAA
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.