Basic Information
VIS ID
TVIS30000576
Fusion event
HIV-CRAMP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1722380/1672379 (Hg38)
End
1722380/1672379 (Hg38)
Orient
-
Location type
Intronic
Target gene
CRAMP1
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-4642 ; hsa-mir-6780a-3p ; hsa-mir-4775 ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-149-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-5196-3p ; hsa-mir-3529-3p ; hsa-mir-590-3p ; hsa-mir-526b-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5093 ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-570-3p ; hsa-mir-454-5p ; hsa-mir-3675-3p ; hsa-mir-942-3p ; hsa-mir-651-3p ; hsa-mir-3646 ; hsa-mir-937-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-323a-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-1-5p ; hsa-mir-6823-5p ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-6715b-3p ; hsa-mir-4326 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3690 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-584-3p ; hsa-mir-6715a-3p ; hsa-mir-619-3p ; hsa-mir-490-3p
Nearest miRNA
hsa-mir-3176/Upstream/902102; hsa-mir-11401/Downstream/62606;
Nearest TSS
ENST00000527434/Upstream/1912; ENST00000568376/Downstream/5877;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/15439, chr16-CpG: 104/Downstream/5559
Upstream sequence
TGCCCGTCGCGAGTAATGCAAACGTGTTCACCTTCAGAAAGAGCAGATCAGCGTTTAGCATGAGATTTTCCCGAGAGCCCTCCACTCAGAACGTGAGTAT
Downstream sequence
GTTTCTCAGCAGGTCCTCGTCATCTGGAAGGATGGGCTGAGGCATTTGTGGATGAAAGGGTCTGGTGGTAGGGCTAGCATGAAGGGGGCGGGGGTGGAGC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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