Basic Information
VIS ID
TVIS30000587
Fusion event
HIV-LOC107984138 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
70279313/70245410 (Hg38)
End
70279313/70245410 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA16B
Target gene
LOC107984138
Nearest miRNA
hsa-mir-1225/Upstream/214988; hsa-mir-11401/Downstream/6623526;
Nearest TSS
ENST00000527434/Upstream/71025; ENST00000569099/Downstream/6520;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/56623, chr16-CpG: 138/Downstream/5579
Nearby gene
EXOSC6(-4821) ;
Upstream sequence
cagtgagctgagatcgtgccattgcactccagcctgagtgacagagtgagactccgtctcaaaaaaaaaTTTTTTTTTCAAAATATTGCAATGGGCTTGT
Downstream sequence
AATTTCTGCTTAAATGTCAGGAGGTCTGAGCCATTTTAAAATAAATCTAGCACAATTTAAGATTTTTTCTTAACCAAAATTTTAAGAAACAGCTTTCTAT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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