Basic Information
VIS ID
TVIS30000589
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
82170888/82137283 (Hg38)
End
82170888/82137283 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/525875; hsa-mir-11401/Downstream/551648;
Nearest TSS
ENST00000527434/Upstream/69006; ENST00000563841/Downstream/2348;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/125582, chr16-CpG: 77/Downstream/32760
Nearby gene
MPHOSPH6(-10879) ;
Upstream sequence
CCTAGTGAGGTTAAATGAAGCTCTGAGGTGAAAGCAGGAAGGATTCGGTTCAGGGAGAGCGTTTGTTTGATACAGGTGTTATACATGATGAACTATCCAT
Downstream sequence
CAGGGACAGGGATCAGAGCAGAGGTCAGAGAAGAGTGGTGGAGGTGAGAACCTGCCATGATCGGGAGAGGAGGGAGGGATGTCACAGTAACATGCAGTCT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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