Basic Information
VIS ID
TVIS30000590
Fusion event
HIV-USP10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
84768744/84735138 (Hg38)
End
84768744/84735138 (Hg38)
Orient
+
Location type
Intronic
Target gene
USP10
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-122-5p ; hsa-mir-98-5p ; hsa-mir-24-3p ; hsa-let-7b-5p ; hsa-mir-455-3p ; hsa-mir-652-3p ; hsa-mir-181b-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p
Nearest miRNA
hsa-mir-1225/Upstream/1226730; hsa-mir-11401/Downstream/472658;
Nearest TSS
ENST00000527434/Upstream/1929; ENST00000566378/Downstream/24140;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/34641, chr16-CpG: 33/Downstream/84604
Upstream sequence
tctttttttcgagacagggtctcactctgcccaggctggagtgcagagtgcaatcacaattcactgcaactttgaccccccgccccgcctcaggggggtt
Downstream sequence
ctcatgcttcagcccctgaatagctgggattacaggtgtgtgctgccaggcccggGTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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