Basic Information
VIS ID
TVIS30000591
Fusion event
HIV-SPG7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
89576064/89509656 (Hg38)
End
89576064/89509656 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPG7
Nearest miRNA
hsa-mir-11401/Upstream/793319;
Nearest TSS
ENST00000527434/Upstream/943; ENST00000611189/Downstream/845;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/696, chr16-CpG: 27/Downstream/12752
Upstream sequence
ATATTTAAATGGGAAAATGTTTATCTTGAAAGGAGAACTCTGAAAGTATATACTTGTTAACTGGTTTGGTACCTGGAAATGTTCTACAAGGAGCCACTCT
Downstream sequence
CTGGTGACAGCAGGAGCCCCGTGTCTGGGCAGCCACTGTGGCCTTTGGAGAGCTGGGCTGCTCCCTTTCTCCTGCAGAAGCTTCAGGCCATGGGATAGCA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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