Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene345489383457948734639318345787053458280634594128
Basic Information
VIS ID
TVIS30000599
Fusion event
HIV-TMEM132E integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
32921147/34594128 (Hg38)
End
32921147/34594128 (Hg38)
Orient
+
Location type
Intronic
Target gene
TMEM132E
Nearest miRNA
hsa-mir-1180/Upstream/2243926; hsa-mir-10226/Downstream/2439617;
Nearest TSS
ENST00000595228/Upstream/13119; ENST00000577271/Downstream/41665;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/11854, chr17-CpG: 77/Downstream/32006
Upstream sequence
gtccctccctggtccccctctatctaaagcagccctgtgcactttcactctgtcccctgaccctgctctgtttcccttcacctgacatatgacatggtta
Downstream sequence
tgtgttccattggaatggaagcccttgagagcagaggccatctctgttttgttcactgctgtatccccaacccctggggcctggcacagaggagatgctc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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