Basic Information
VIS ID
TVIS30000605
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
52684391/54607030 (Hg38)
End
52684391/54607030 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/3838300; hsa-mir-1250/Downstream/2284240;
Nearest TSS
ENST00000595228/Upstream/784129; ENST00000574744/Downstream/292357;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/849491, chr17-CpG: 42/Downstream/293475
Nearby gene
TOM1L1(+293661) ;
Upstream sequence
aagcctgagatctcagcccaaagtgagaatttatatcatgttttcctgctcgaatgttgccttttcctaaaccacccttatccttaccctgccccaccct
Downstream sequence
gtgcctataaagaccccagactcagctggcagagaggagaagcagctgaatgttggagaccacagctggacatcagaaagcagcggcttgacttcagagg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate