Basic Information
VIS ID
TVIS30000607
Fusion event
HIV-ANKFN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
54321470/56244109 (Hg38)
End
54321470/56244109 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKFN1
Nearest miRNA
hsa-mir-10226/Upstream/5475379; hsa-mir-1250/Downstream/647161;
Nearest TSS
ENST00000595228/Upstream/16192; ENST00000572312/Downstream/79114;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/398331, chr17-CpG: 40/Downstream/266484
Upstream sequence
GGGGAGTGGAGGGGGTCACTATGAAAGCAGGAAGGTGGAGATAGGGTGCTGTTTGGAGAGAAGTTCTGAGTGGCATACATAGAATGTGGCATGTGGCAGA
Downstream sequence
AAAGGAGTGGTGACTATAAAATACTGTGTAAGTGATGAGCTTTCTTTCTCTACTCATATCTTGTAAACTTCAatacattaatttcaaaaatatgtatcaa
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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