Basic Information
VIS ID
TVIS30000614
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
End
79836890/81879014 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/185145; hsa-mir-4525/Downstream/357654;
Nearby gene
ARHGDIA(-7608) ;
Upstream sequence
AATAATAACAACTAATACATGTAAACCATAAACATTTATGAAAATTATATATCCTCATATAAATTTCATAACATATGTAAGTTACaaaagaaagaaaaag
Downstream sequence
tcaacgaggatatgggggaagccaaaaggaatacaaactaacaaatgaacctaactatgtacaaattatgcaaatcacataatttgcaggaggtggaaag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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