Basic Information
VIS ID
TVIS30000615
Fusion event
HIV-TBCD integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80804474/82846598 (Hg38)
End
80804474/82846598 (Hg38)
Orient
+
Location type
Intronic
Target gene
TBCD
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-10226/Upstream/178291;
Nearest TSS
ENST00000595228/Upstream/6020; ENST00000572984/Downstream/11921;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/13893, chr17-CpG: 32/Downstream/2215
Upstream sequence
CCCTGCTGTGGCCTCTGCCTTCCGTCCCTGGCGGTAGTGAGACTGGCTGAGACCCAGGGGAAGCTTGGAGACTGTCCTAGATTTCGGAGATGGTGGTACA
Downstream sequence
CAGGCTTGCTGGCTTGGGTTAGGGCTCTAGGCCCTGCCTTCGGGTTGTCTGGAAGCCGCCAGCCAGGCCTGGACACCTCTCTGCCCCCGTCACCTCGGAG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate