Basic Information
VIS ID
TVIS30000624
Fusion event
HIV-ZNF506 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
19915076/19804267 (Hg38)
End
19915076/19804267 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ZNF506
miRNAs that regulate target gene
hsa-mir-30c-5p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-10395/Upstream/369109; hsa-let-7e/Downstream/595005;
Nearest TSS
ENST00000633603/Upstream/5228; ENST00000589668/Downstream/17425;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/71133, chr19-CpG: 20/Downstream/56501
Upstream sequence
atttttgcaatctacccatctgacaaagggctaatatccagaatctacaaagaacttaaacaaatttacaagaaaaaaaacaaccccaccaaaaagtggg
Downstream sequence
caaaggatatgaacagacatttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgttcatcatcactggtcatcagagaaatgcaaat
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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