VISDB Viral Integration Site DataBase

VIS ID

TVIS30000627

Fusion event

HIV-CARD8 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr19

Cytoband

q13.33

Reference genome

Start

End

48710581/48207324 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-375 ; hsa-mir-629-5p ; hsa-mir-4793-5p ; hsa-mir-4724-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-2467-3p ; hsa-mir-377-5p ; hsa-mir-4487 ; hsa-mir-1827 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-665 ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-6818-3p ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-339-5p ; hsa-mir-4698 ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-548c-3p ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-3165 ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-3656 ; hsa-mir-6087 ; hsa-mir-4493 ; hsa-mir-383-3p ; hsa-mir-194-5p ; hsa-mir-219a-1-3p ; hsa-mir-3613-3p ; hsa-mir-3672 ; hsa-mir-431-5p ; hsa-mir-4635 ; hsa-mir-4668-5p ; hsa-mir-4725-5p ; hsa-mir-4786-5p ; hsa-mir-4797-5p ; hsa-mir-555 ; hsa-mir-661 ; hsa-mir-6861-5p ; hsa-mir-6864-3p ; hsa-mir-769-5p

Nearest miRNA

hsa-mir-10395/Upstream/980303; hsa-let-7e/Downstream/802582;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/3120, chr19-CpG: 53/Downstream/63974

Nearby gene

CARD8(-762) ;

Upstream sequence

tctaggacttcccagcctgagaactgtaagaaataaaattttactctttaagccactgagtccatggtattttgttatggcaacctgagcaggataagGT

Downstream sequence

Agtatacatacctttaacttcactgtgtaacttcagattaatttccaaaatcaagcattacctaaccaacagcagaacttacatttgtgctccatatact