VISDB Viral Integration Site DataBase

VIS ID

TVIS30000633

Fusion event

HIV-PPP6R1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr19

Cytoband

q13.42

Reference genome

Start

End

55749560/55238192 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1296-5p ; hsa-mir-1229-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-3147 ; hsa-mir-6867-3p ; hsa-mir-6793-5p ; hsa-mir-92a-1-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-2861 ; hsa-mir-6735-3p ; hsa-mir-214-5p ; hsa-mir-942-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-130a-3p ; hsa-mir-3666 ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-4535 ; hsa-mir-4800-5p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-659-5p ; hsa-mir-492 ; hsa-mir-6861-3p ; hsa-mir-610 ; hsa-mir-6768-3p ; hsa-mir-450b-5p ; hsa-mir-6083 ; hsa-mir-106a-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-3667-3p ; hsa-mir-4517 ; hsa-mir-99b-3p ; hsa-mir-99a-3p ; hsa-mir-3121-3p ; hsa-mir-6873-3p ; hsa-mir-4279 ; hsa-mir-6749-3p ; hsa-mir-642a-5p ; hsa-mir-6794-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3615 ; hsa-mir-6845-3p ; hsa-mir-6812-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6892-3p ; hsa-mir-2276-5p ; hsa-mir-4639-3p ; hsa-mir-1247-3p ; hsa-mir-184 ; hsa-mir-4683 ; hsa-mir-4699-5p ; hsa-mir-5092 ; hsa-mir-5587-3p ; hsa-mir-6746-5p ; hsa-mir-7106-5p ; hsa-mir-7154-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p

Nearest miRNA

hsa-let-7e/Upstream/7240; hsa-mir-10394/Downstream/1720;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/20931, chr19-CpG: 161/Downstream/19709

Upstream sequence

gtctcacaatgttgcccaggctgggctgaaattcctgaactcaagcgatcctcctgcctcggcctccctaagtgctgggattaagatgtgagccactgtg

Downstream sequence

tccagccCAGTTTTCACTTGAGCATCTTCTCCAGGGGTCTCGGCACAGGCCACTGACCCACAAAGACCAACGCTCTGCAAGTCTCCATGCTGGGCACAGA