Basic Information
VIS ID
TVIS30000637
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr20
Cytoband
q12
Reference genome
GRCh37/hg19
Start
37889916/39261273 (Hg38)
End
37889916/39261273 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/744641; hsa-mir-1-1/Downstream/1907750;
Nearest TSS
ENST00000382410/Upstream/36525; ENST00000444436/Downstream/524448;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/210815, chr20-CpG: 92/Downstream/1421465
Nearby gene
LINC01734(-36525) ;
Upstream sequence
ctctgcattgttacatccagtggggacttttggggcctagttgcacctgatagcactgacctccttattcatttttgaccttcgcttcttttgttcttgg
Downstream sequence
gtccccacagtctccttgttttccttttacctctctggtcacttcttagtcacatttgcaggctcttctctcttggcccaagaccttacattttgggatg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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