Basic Information
VIS ID
TVIS30000640
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
43070490/41650330 (Hg38)
End
43070490/41650330 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/482701; hsa-mir-5692b/Downstream/96442;
Nearest TSS
ENST00000624081/Upstream/69011; ENST00000413718/Downstream/28851;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/141583, chr21-CpG: 32/Downstream/38859
Nearby gene
LINC00111(+28972) ;
Upstream sequence
attcactgtccactgaccctgaacaagagacagcctgccctggacttccaggttgatggaatgagctacggtactattcctccccactcacagggctact
Downstream sequence
gggagggtaaaaCTGGACTCGAGGTTGATGGAATGAGCTAAGGGACTGTTCCTCCGCGACTGTTCCTCCGCACTCACAGGGCTACTGGAAGGGTAAAATG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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