Basic Information
VIS ID
TVIS30000646
Fusion event
HIV-RBM10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
47011700/47152301 (Hg38)
End
47011700/47152301 (Hg38)
Orient
-
Location type
Intronic
Target gene
RBM10
miRNAs that regulate target gene
hsa-mir-1226-3p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-324-3p ; hsa-mir-186-5p ; hsa-mir-222-3p ; hsa-mir-92a-3p ; hsa-mir-20a-5p
Nearest miRNA
hsa-mir-1587/Upstream/1405177; hsa-let-7f-2/Downstream/435128;
Nearest TSS
ENST00000429181/Upstream/6797; ENST00000478410/Downstream/22711;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/6713, chrX-CpG: 18/Downstream/27645
Upstream sequence
actccatatcaaaaaaataaataaaaattttgtaaattgcattaaatgatatccttggcattcttgagctataccccacttgatcatggtatgtatGTAT
Downstream sequence
ATGTTTATGACttcttactttgaaaatatctcaaatttacagaaaggttgcaagaaaaagtataatgaattcccatatatcctctactcagaattacttg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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