Basic Information
VIS ID
TVIS30000648
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
108512169/109268940 (Hg38)
End
108512169/109268940 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/2629044; hsa-mir-105-1/Downstream/786389;
Nearest TSS
ENST00000429181/Upstream/532400; ENST00000372107/Downstream/213132;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/532025, chrX-CpG: 30/Downstream/267885
Nearby gene
GUCY2F(-103966) ;
Upstream sequence
ATTATTCATATTACAGTCTTGGGGACTGAATCTACTATGTTTCACAAGAGGATGTCAGGGGGTTGAAAGGGACctttgctacttactggctatgtgatct
Downstream sequence
caggcaaaggacttgagtgctctttgcctcagtttcctcatccataaaatggggatactaggagtacctaTGTTACTGTTAGCTATCATTGTTATTATTG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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