Basic Information
VIS ID
TVIS30000650
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
112246365/113003137 (Hg38)
End
112246365/113003137 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/222349; hsa-mir-105-1/Downstream/1636298;
Nearest TSS
ENST00000429181/Upstream/162322; ENST00000371951/Downstream/935081;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/161550, chrX-CpG: 18/Downstream/1387360
Nearby gene
LOC101928437(No orient, 39590)
Upstream sequence
CAAATGTAAATGATCTGCTCCAATCATCTAAAGTCTGTAAGTTTGGTAGGGACAGACGACCCAATCTCCGGCTGTCTTCTCTTTTGAGTCCAATTGTGAA
Downstream sequence
AGCTTGTCTTTTACTAGTCTCATTTTAATTAGCTGATAACGAGAAACAATGATGAAGTGGCCCGAGGGAAAGCTCCGAGCTATCCAACTGAACATCACAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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