Basic Information
VIS ID
TVIS30000655
Fusion event
HIV-LOC107984928 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
23908123/23581633 (Hg38)
End
23908123/23581633 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
LOC107984928
Nearest miRNA
hsa-mir-12136/Upstream/537261; hsa-mir-101-1/Downstream/347437;
Nearest TSS
ENST00000473358/Upstream/138; ENST00000612756/Downstream/45701;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13059, chr1-CpG: 17/Downstream/110232
Nearby gene
ID3(-21838) ;
Upstream sequence
TGCAAGTTGGGACAGCAGAGGCCCTTCATTCCTCCCCAGGGCTCCCACACCTTGGGAGGGACTGTGAAGAGTGACTCTTGTCcagtggttttcaaactgg
Downstream sequence
gttcctctaagccctggggtattagtgccccagggacccctgaaggtaaggaggtgGCGCGTGGTGGAAGCAAGGGGCACCCTAAGAAGGCTCAAttctt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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