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TVIS30000658
Basic Information
VIS ID
TVIS30000658
Fusion event
HIV-KPNA6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
32599881/32134280 (Hg38)
End
32599881/32134280 (Hg38)
Orient
-
Location type
Intronic
Target gene
KPNA6
miRNAs that regulate target gene
hsa-mir-98-5p
;
hsa-mir-24-3p
;
hsa-mir-877-3p
;
hsa-mir-615-3p
;
hsa-mir-378a-3p
;
hsa-mir-222-3p
;
hsa-mir-221-3p
;
hsa-mir-92a-3p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-30a-5p
;
hsa-mir-30c-5p
;
hsa-mir-30d-5p
;
hsa-mir-30b-5p
;
hsa-mir-30e-5p
;
hsa-mir-3646
;
hsa-mir-19a-3p
;
hsa-mir-19b-3p
;
hsa-mir-548f-5p
;
hsa-mir-548g-5p
;
hsa-mir-548x-5p
;
hsa-mir-548aj-5p
;
hsa-mir-548aw
;
hsa-mir-26a-5p
;
hsa-mir-26b-5p
;
hsa-mir-3125
;
hsa-mir-3185
;
hsa-mir-3916
;
hsa-mir-6077
;
hsa-mir-6859-5p
;
hsa-mir-3688-3p
;
hsa-mir-6807-5p
;
hsa-mir-381-3p
;
hsa-mir-655-3p
;
hsa-mir-300
;
hsa-mir-374c-5p
;
hsa-mir-619-5p
;
hsa-mir-7151-3p
;
hsa-mir-5095
;
hsa-mir-4699-5p
;
hsa-mir-1292-3p
;
hsa-mir-4438
;
hsa-mir-1468-3p
;
hsa-mir-6750-3p
;
hsa-mir-5692a
;
hsa-mir-1293
;
hsa-mir-4531
;
hsa-mir-516b-5p
;
hsa-mir-7107-3p
;
hsa-mir-6753-3p
;
hsa-mir-4527
;
hsa-mir-6503-5p
;
hsa-mir-5703
;
hsa-mir-4516
;
hsa-mir-4434
;
hsa-mir-1253
;
hsa-mir-641
;
hsa-mir-3617-5p
;
hsa-mir-1252-3p
;
hsa-mir-7-5p
;
hsa-mir-384
;
hsa-mir-3685
;
hsa-mir-5006-5p
;
hsa-mir-6868-3p
;
hsa-mir-202-5p
;
hsa-mir-337-3p
;
hsa-mir-4755-3p
;
hsa-mir-627-3p
;
hsa-mir-3124-3p
;
hsa-mir-1248
;
hsa-mir-1237-3p
;
hsa-mir-3927-5p
;
hsa-mir-4279
;
hsa-mir-6778-3p
;
hsa-mir-1976
;
hsa-mir-3653-5p
;
hsa-mir-532-3p
;
hsa-mir-6747-3p
;
hsa-mir-6727-3p
;
hsa-mir-4722-3p
;
hsa-mir-662
;
hsa-mir-133a-3p
;
hsa-mir-133b
;
hsa-mir-1915-3p
;
hsa-mir-198
;
hsa-mir-323a-5p
;
hsa-mir-4281
;
hsa-mir-4726-3p
;
hsa-mir-6764-5p
;
hsa-mir-6840-3p
;
hsa-mir-876-3p
;
hsa-mir-106a-5p
;
hsa-mir-106b-5p
;
hsa-mir-150-5p
;
hsa-mir-17-5p
;
hsa-mir-186-3p
;
hsa-mir-20a-5p
;
hsa-mir-20b-5p
;
hsa-mir-302a-3p
;
hsa-mir-302b-3p
;
hsa-mir-302c-3p
;
hsa-mir-302d-3p
;
hsa-mir-302e
;
hsa-mir-372-3p
;
hsa-mir-373-3p
;
hsa-mir-519d-3p
;
hsa-mir-520a-3p
;
hsa-mir-520b
;
hsa-mir-520c-3p
;
hsa-mir-520d-3p
;
hsa-mir-520e
;
hsa-mir-520g-3p
;
hsa-mir-520h
;
hsa-mir-526b-3p
;
hsa-mir-6504-3p
;
hsa-mir-93-5p
Nearest miRNA
hsa-mir-12136/Upstream/47273; hsa-mir-101-1/Downstream/1198113;
Nearest TSS
ENST00000473358/Upstream/26222;
ENST00000469790/Downstream/8643;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/25563
,
chr1-CpG: 65/Downstream/45273
Upstream sequence
caggaggcggaggttgcagtgagccgagattgcaccattgcgctccagccttggtgacagtacaacacttcgtctcaaaaaaaaaaaaaaaattctatat
Downstream sequence
ctaacaaaactgcccttctaaaatgagggagaaattaagatatttccagataaacaaaagcttaggggggttgttaccactaaacctgcagtgacttagc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Sample Information
×
Sample name
Bcl-2 Model
Sample type
Cell line
Gender
Female
CpG Island Information
×
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