Basic Information
VIS ID
TVIS30000662
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
93605190/93139633 (Hg38)
End
93605190/93139633 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/6781946; hsa-mir-11399/Downstream/707199;
Nearest TSS
ENST00000473358/Upstream/10838; ENST00000448243/Downstream/23577;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/60158, chr1-CpG: 77/Downstream/40482
Nearby gene
MTF2(+552) ;
Upstream sequence
ccccgtctctactaaaaatgcaaaaaaattagcctggtgtggtggcaggcgcttgtagtcccagccactcgggaggctgaggccggagaatggcgtgaac
Downstream sequence
cctggaggtggagcttgcagtgaagcagtgagccaagatcgcaccactgcactccagcctgggcaacagagtgagactccgtctcaaaaaaaaaaaaaaa
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate