Basic Information
VIS ID
TVIS30000664
Fusion event
HIV-UAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
162553455/162583665 (Hg38)
End
162553455/162583665 (Hg38)
Orient
-
Location type
Intronic
Target gene
UAP1
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-155-5p
Nearest miRNA
hsa-mir-101-1/Upstream/241025; hsa-mir-1182/Downstream/3324256;
Nearest TSS
ENST00000473358/Upstream/2234; ENST00000486089/Downstream/13576;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/21602, chr1-CpG: 44/Downstream/206795
Upstream sequence
atcatctggtcaacccctttgatctcagaaatgagaatCCTGAGTTCTAGTACtttgtttgtttatttatttatttatttatttgacagggtctggctct
Downstream sequence
gttgcctaggctggattgcagtgatgtgatcttggctcactgcaacttctgcctccaggctcagcaattctcctgcctcagcctctggagtagctggtac
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate