Basic Information
VIS ID
TVIS30000666
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
198575352/198606222 (Hg38)
End
198575352/198606222 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/2023741; hsa-mir-1182/Downstream/252651;
Nearest TSS
ENST00000473358/Upstream/7354; ENST00000367364/Downstream/32235;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/446988, chr1-CpG: 36/Downstream/1429124
Nearby gene
PTPRC(+32746) ;
Nearest cancer related gene
PTPRC(TSG, +32746) ;
Upstream sequence
TGGGGGACCCTCAAGGGATGGGAGGAGGGGTGAGCAGTTTGCAAGTCTGAGAAATACAAATCTTTGAGGTGACTAAATTAAAAACATGCTATGAAGCTAT
Downstream sequence
AAACTCACTCCTGAATCTGTGGCCTCAGGTCAAAATCCCTGCAGGAGAGCTGTTTCCTCAATGCCTGTGCTTGTTAACATTTTCTGTAAGGAGCAGCCCA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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