Basic Information
VIS ID
TVIS30000667
Fusion event
HIV-CEP170 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
243353615/243190313 (Hg38)
End
243353615/243190313 (Hg38)
Orient
+
Location type
Intronic
Target gene
CEP170
miRNAs that regulate target gene
hsa-mir-125b-5p ; hsa-mir-34a-5p ; hsa-mir-3926 ; hsa-mir-4753-5p ; hsa-mir-33a-3p ; hsa-mir-4803 ; hsa-mir-6768-3p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-519d-3p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-4775 ; hsa-mir-633 ; hsa-mir-4762-5p ; hsa-mir-6771-3p ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-587 ; hsa-mir-7641 ; hsa-mir-885-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2057967; hsa-mir-3124/Downstream/155863;
Nearest TSS
ENST00000473358/Upstream/3814; ENST00000491888/Downstream/10501;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/88419, chr1-CpG: 91/Downstream/64126
Upstream sequence
ATCACAATTTGTTCAAAATCGTTTTCCTTATAGATAGCTTATTAAATAAAAGATAGGGTAACATAAATCTATACTCAATTCTAAAATAAATTTAATTGGC
Downstream sequence
AAAACCAATGAGAAAAAACTGATCAGCTGATACATCAGTGTACAAACATACAAATTGTACTAATTTTGGCTAAGTTCTACACAAATAAAGTATATATAAC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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