Basic Information
VIS ID
TVIS30000668
Fusion event
HIV-ANXA4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr2
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
69886686/69659554 (Hg38)
End
69886686/69659554 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2E
Target gene
ANXA4
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-3134 ; hsa-mir-1246 ; hsa-mir-4320
Nearest miRNA
hsa-mir-1301/Upstream/555799; hsa-mir-10b/Downstream/593364;
Nearest TSS
ENST00000437798/Upstream/15129; ENST00000484219/Downstream/14795;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/14970, chr2-CpG: 88/Downstream/82063
Nearby gene
AAK1(-15709) ;
Upstream sequence
tttagagagaagggtctcattctgttgcctaggctggagtgcagtggtgtgatcaatagctcactgcaaccttgaacttctgggctcaagtgatgctTTT
Downstream sequence
GTTACtatgtatggcatgtgtcaaatacaagtatttggctttcagaatagttaagtaagaatcatgtataaaaatcagcaataGAgcagggcatggtggc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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