Basic Information
VIS ID
TVIS30000674
Fusion event
HIV-LOC105373712 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
158340282/157483770 (Hg38)
End
158340282/157483770 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373712
Nearest miRNA
hsa-mir-128-1/Upstream/6115359; hsa-mir-10b/Downstream/1703065;
Nearest TSS
ENST00000437798/Upstream/39628; ENST00000604340/Downstream/5059;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1047273, chr2-CpG: 31/Downstream/113517
Nearby gene
CYTIP(-39678) ;
Upstream sequence
AACATAATTGAAAGTATTTTCTTCAAACAATTTTGAAATTGTATTTTTTCAACATATTATATCACACATTTTACCCCATATCAATGACACTTTTCATGGG
Downstream sequence
CATTATTTTCTCATCTGAGAAGATGGAAACAATAAATAGATTAGATGGACATATATAATAGACTAGTACAATAACGTGATAGTATGGTTTAGATAATTTT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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