Basic Information
VIS ID
TVIS30000679
Fusion event
HIV-LOC107985988 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr2
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
221802652/220937932 (Hg38)
End
221802652/220937932 (Hg38)
Location type
Intronic
Target gene
LOC107985988
Nearest miRNA
hsa-mir-10b/Upstream/1031367; hsa-mir-1244-1/Downstream/4072529;
Nearest TSS
ENST00000437798/Upstream/146854; ENST00000609776/Downstream/487608;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1309867, chr2-CpG: 260/Downstream/633078
Nearby gene
EPHA4(-480095) ;
Upstream sequence
GTGCTTCATGGATCTCCTCTCATTACTAAAACACATTATGAAAAGCAAGTCAGTTGTTTGCATGTCCTGATGGCAGAGTCAGAGGACAGGGCTGGGAGAT
Downstream sequence
CCAAGGTACCTTCTTGCATAAAAAGAAGGTATAGATTTAGGGTCTTTACTAAGAAAGAATAAACACAAACAGTCTACAAATTTGATGGTAAGTGTAGGAT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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