Basic Information
VIS ID
TVIS30000680
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
23794012/23752521 (Hg38)
End
23794012/23752521 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/3614880; hsa-let-7g/Downstream/1912352;
Nearest TSS
ENST00000440867/Upstream/252915; ENST00000484048/Downstream/53382;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/548964, chr3-CpG: 66/Downstream/53680
Nearby gene
UBE2E1-AS1(No orient, 51503)
Upstream sequence
GGCCAGGAGTAACAGCATCAGGGACCACACCAACCAAAGACCAGGCCTACCTCCATTCCCTGCCTGGCATAAGCTCCACAGttctttttttttttttttt
Downstream sequence
tttttgagaccaagtcacgctcttgttgcccaggctggagtgcagtggcgcagtctcagctcactgcaacctttgcttcctgggttcaagcaactctctg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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