Basic Information
VIS ID
TVIS30000681
Fusion event
HIV-DCAF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
51462604/51425153 (Hg38)
End
51462604/51425153 (Hg38)
Orient
+
Location type
Intronic
Target gene
DCAF1
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-12127/Upstream/749990; hsa-let-7g/Downstream/843125;
Nearest TSS
ENST00000440867/Upstream/33885; ENST00000602430/Downstream/58685;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/31847, chr3-CpG: 76/Downstream/74173
Upstream sequence
ACGTAGTGAATGCTAAGAGTAATTTTCTTTTCTCTTTAAAAGATTCTGCATATTCTAAAGCAGAAACatttattaattttatttctaaaaataaattttt
Downstream sequence
aaaatCAAGGACATATTTTTTCAATAATCCAAATACAggccggaccgtgtttcatgcctataatcccagcacattgagaggctgaggcgggcagatcact
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate