Basic Information
VIS ID
TVIS30000685
Fusion event
HIV-MIR1273H integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
39178007/39176387 (Hg38)
End
39178007/39176387 (Hg38)
Location type
ncRNA_intronic
Target gene
MIR1273H
Nearest miRNA
hsa-mir-12113/Upstream/308260; hsa-mir-1243/Downstream/235523;
Nearest TSS
ENST00000502981/Upstream/42474; ENST00000502389/Downstream/6017;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/5485, chr4-CpG: 40/Downstream/5816
Upstream sequence
atttttgtacttttagtagaggcggggtttcaccatgttggccaggctggtctctaactcctgacctcaggtgacccgcccgcctcagcctcccaaagtc
Downstream sequence
ctgggattacaagcatgagccactgcacccagcctagaaaattattaattattgatctgattttttaaatagatacaggctattcattagtaattcatta
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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