Basic Information
VIS ID
TVIS30000692
Fusion event
HIV-HSD17B4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
118862457/119526762 (Hg38)
End
118862457/119526762 (Hg38)
Orient
-
Location type
Intronic
Target gene
HSD17B4
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-10397/Upstream/372046; hsa-mir-103a-1/Downstream/9570926;
Nearest TSS
ENST00000502646/Upstream/1026; ENST00000503310/Downstream/396;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/74029, chr5-CpG: 42/Downstream/937364
Upstream sequence
TTTTCATTTTGTTACAACTATTTTTTATTATCCAGTAATATATACACAGAGaaaataatataaaaaattatgaaataaaaaGTGGAATTATTTTGCCCTG
Downstream sequence
CATACTCACCCCAGGCCTCATTCCTTAGACTTAATTTGTaccacttttaactgtttctttaagttgttctgatgtacctatataactcacctaatatgat
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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