Basic Information
VIS ID
TVIS30000697
Fusion event
HIV-CTC-338M12.4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
180679876/181252876 (Hg38)
End
180679876/181252876 (Hg38)
Location type
ncRNA_intronic
Target gene
CTC-338M12.4
Nearest miRNA
hsa-mir-10397/Upstream/30243;
Nearest TSS
ENST00000502646/Upstream/4780; ENST00000412295/Downstream/7318;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/5726, chr5-CpG: 84/Downstream/8174
Upstream sequence
GGTTCTGCGTAATACCTGAAAACAAAAAATGACATCCCTACTGCTCTGCTGGAACTGAGTAGCTGAAGTGATTGTTATTACTCAAAATCTCCAGAGCTTG
Downstream sequence
ATTTTGTAAACTGTTTATCTGTCACGGTTCTTGTTCTCCCAAATCCAAGTGACATAAGCAGCGGTAATGTTTAGAAAAGGTTTGTTGACTTTGCTACCCC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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