Basic Information
VIS ID
TVIS30000700
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
74230954/73521231 (Hg38)
End
74230954/73521231 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA6D
Nearest miRNA
hsa-mir-10398/Upstream/553478; hsa-mir-10524/Downstream/1907176;
Nearest TSS
ENST00000381078/Upstream/199; ENST00000431108/Downstream/357;
Nearest CpG islands
chr6-CpG: 135/Target, None/Upstream, None/Downstream
Nearby gene
EEF1A1(-199) ;
Nearest cancer related gene
EEF1A1(OG, -199) ;
Upstream sequence
CCACCTTCTCTAGGCACCGGTTCAATTGCCGACCCCTCCCCCCAACTTCTCGGGGACTGTGGGCGATGTGCGCTCTGCCCACTGACGGGCACCGGAGCCT
Downstream sequence
CACGCATGCTCTTCTCCACCTCAGTGATGACGAGAGCGGGCGGGTGAGGGGGCGGGAACGCAGCGATCTCTGGGTTCTACGTTAGTGGGAGTTTAACGAC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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