Basic Information
VIS ID
TVIS30000704
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
q26
Reference genome
GRCh37/hg19
Start
163832040/163411008 (Hg38)
End
163832040/163411008 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA6E
Nearest miRNA
hsa-mir-10398/Upstream/4646255; hsa-mir-1913/Downstream/3098346;
Nearest TSS
ENST00000381078/Upstream/86478; ENST00000537124/Downstream/2952;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/261226, chr6-CpG: 341/Downstream/2289
Nearby gene
CAHM(-2057) ;
Upstream sequence
tcaatctcccaagtagctgggtctacaggtatgtgacaccagactctgttaatttttgtattttctagagagatagggtctcactatgttgcctagactg
Downstream sequence
gtttcaaaatcccgggctcaagtgatccacctgtcttggcctcccaaaatgctgggattactggcacaaacaccgcacccgaccCTCTGCagctacttac
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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