Basic Information
VIS ID
TVIS30000705
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
7961607/7921976 (Hg38)
End
7961607/7921976 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/854931; hsa-mir-10399/Downstream/10205244;
Nearest TSS
ENST00000635602/Upstream/149615; ENST00000460897/Downstream/28733;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/280928, chr7-CpG: 81/Downstream/47250
Nearby gene
LOC100505921(-27863) ;
Upstream sequence
ATTTGAGTTGGCTTCTAGTAGGTTCCAAATGAGGCAGAGTAGAGCCTTAAATTTCTTGTAATGATCAGAAGGCAATGCATCCTTTTTATTATGTGGTAAT
Downstream sequence
CTGTTGGCTGAGTTCAGATTGCCAACCTCTCTGTACCCTGCTTTGGTTGACTAGTTGGCTCACTCCTCTGGATGTTACATAATAGCCTGTGCTGGTAGAG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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