Basic Information
VIS ID
TVIS30000706
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
33714289/33674677 (Hg38)
End
33714289/33674677 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/941600; hsa-mir-10399/Downstream/1266083;
Nearest TSS
ENST00000635602/Upstream/140990; ENST00000311067/Downstream/51304;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/545046, chr7-CpG: 153/Downstream/229376
Nearby gene
BBS9(+68609) ;
Upstream sequence
AACAGTGATATATGGTTTTCTGGAAGACCAAGAATGGTAAGGAAAAATAGGTGCTGTATACACACGTATGCATAATCATGTTATTACAGAATTTATGTTG
Downstream sequence
GGGGGGAAAATGAGAGTTGTTCTGTAGGGGGAAAAATGAGACTTATTATTTGGTCCTGGAATATTATATTCAGTAACTTCTTGTTACTGAAGTTAACTGT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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