Basic Information
VIS ID
TVIS30000709
Fusion event
HIV-ZC3HAV1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
138788335/139103589 (Hg38)
End
138788335/139103589 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZC3HAV1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-615-3p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6859-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-3065-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-4640-3p ; hsa-mir-548ah-5p ; hsa-mir-3609
Nearest miRNA
hsa-mir-10399/Upstream/59432; hsa-mir-11400/Downstream/3370938;
Nearest TSS
ENST00000635602/Upstream/24322; ENST00000479132/Downstream/5765;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/67316, chr7-CpG: 122/Downstream/4778
Upstream sequence
ttaattggccagaaaatgaggaaactgggacactcagacatataagtataaattggcacagccacctttatactaattcgtcagaatctggaaaagttga
Downstream sequence
agctatgtaacaattcaaaccaacaattccacttcctaatgatctaccctggaaaagctctaaccatgagcaccaggaaacacttgcacgtaaattcttg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate