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VISDB
Viral Integration Site DataBase
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TVIS30000711
Basic Information
VIS ID
TVIS30000711
Fusion event
HIV-RBM33 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
155509393/155716699 (Hg38)
End
155509393/155716699 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
RBM33
miRNAs that regulate target gene
hsa-mir-106b-3p
;
hsa-mir-20a-3p
;
hsa-mir-221-3p
;
hsa-mir-34a-5p
;
hsa-mir-33a-5p
;
hsa-mir-570-3p
;
hsa-mir-586
;
hsa-mir-33b-5p
;
hsa-mir-510-3p
;
hsa-mir-934
;
hsa-mir-3618
;
hsa-mir-5096
;
hsa-mir-3912-5p
;
hsa-mir-6749-3p
;
hsa-mir-6802-3p
;
hsa-mir-6753-3p
;
hsa-mir-7107-3p
;
hsa-mir-3667-3p
;
hsa-mir-660-3p
;
hsa-mir-5193
;
hsa-mir-5088-3p
;
hsa-mir-3620-3p
;
hsa-mir-6865-3p
;
hsa-mir-6866-3p
;
hsa-mir-188-5p
;
hsa-mir-1292-5p
;
hsa-mir-1972
;
hsa-mir-4502
;
hsa-mir-5586-3p
;
hsa-mir-759
;
hsa-mir-8075
Nearest miRNA
hsa-mir-10399/Upstream/4283060; hsa-mir-153-2/Downstream/1857637;
Nearest TSS
ENST00000635602/Upstream/9885;
ENST00000438356/Downstream/29720;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/71576
,
chr7-CpG: 19/Downstream/64209
Upstream sequence
TATAAAAATCACGTCTTTACATTTAATATGTAGTGTTTTTCTTTGTCACCTTCATTATAATCTTCTGAGGTCAGAGATATTCTTGTTTTTTTCTTTCTCC
Downstream sequence
ACTTTCTCCAGTCTAGTGTTTCACTTTAGATATGGAATTGATGTAACATCAGCTGTGTAGAATTGAGGGGAGAGTTGGATTCTATTTTATATAAAGTCTT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Sample Information
×
Sample name
Bcl-2 Model
Sample type
Cell line
Gender
Female
CpG Island Information
×
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