Basic Information
VIS ID
TVIS30000714
Fusion event
HIV-LOC101927413 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
109906782/108894553 (Hg38)
End
109906782/108894553 (Hg38)
Location type
Intronic
Target gene
LOC101927413
Nearest miRNA
hsa-mir-12123/Upstream/4410088; hsa-mir-10400/Downstream/3748940;
Nearest TSS
ENST00000518652/Upstream/106938; ENST00000518632/Downstream/24060;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/106940, chr8-CpG: 81/Downstream/439134
Nearby gene
TMEM74(-107012) ;
Upstream sequence
ctctcttccgtatggcatggccagtcttgcatcaattaaactctttctttactgcaatgctgtggtctcagtaaaatgattttgtctgtggggcaggtag
Downstream sequence
gaagaacctgatggatgattacaTTAGTGTTAGTTCCACACTTCCCATTATCACAGCCATGATAAACTGTGTCCTAAATTATATGTATTATCTTTTTtcc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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