Basic Information
VIS ID
TVIS30000716
Fusion event
HIV-TMEM71 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
133751878/132739632 (Hg38)
End
133751878/132739632 (Hg38)
Orient
-
Location type
Intronic
Target gene
TMEM71
Nearest miRNA
hsa-mir-1204/Upstream/2731179; hsa-mir-10400/Downstream/306849;
Nearest TSS
ENST00000518652/Upstream/11646; ENST00000522580/Downstream/20916;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/63880, chr8-CpG: 57/Downstream/35563
Upstream sequence
gatctcctgacctcgtgatccgcctgcctcggcctcccaaagtgctgggattacaggagtgagccaccgtgtcaggccccaactctgctgtttataagct
Downstream sequence
aaattaacttgggcgagttccttaaccctgaacttcagttttatcataattataataaatatgataatatgacctacttcttatgagttttggggatatt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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