Basic Information
VIS ID
TVIS30000719
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
15549880/15549882 (Hg38)
End
15549880/15549882 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/9541978; hsa-let-7a-1/Downstream/3023424;
Nearest TSS
ENST00000422679/Upstream/38863; ENST00000474193/Downstream/3204;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/38648, chr9-CpG: 56/Downstream/2853
Nearby gene
CCDC171(No orient, 3217)
Upstream sequence
CACAGAAGGGGAAGGTGAGTGACTTGCATTGGGCCACAAGGAAGGTCCTAATTATGAGTGTCTCAATAGGAAGCAATAAGGAAACAGACAAATGAAGTTG
Downstream sequence
CTTAGTACTAAGTAGGCACAGAAAGAAGACATGAGGTTTAGAGAAAAAGTAGGAATCCTGCATGCAGGAAGTGAGAGTTTGAGAGAGAAAGACGCAAACA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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