Basic Information
VIS ID
TVIS30000735
Fusion event
HIV-MIR4300HG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
81596144/81885102 (Hg38)
End
81596144/81885102 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR4300HG
Nearest miRNA
hsa-mir-10392/Upstream/2462876; hsa-let-7a-2/Downstream/5639;
Nearest TSS
ENST00000527297/Upstream/1122276; ENST00000526154/Downstream/85892;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2443942, chr11-CpG: 25/Downstream/804441
Upstream sequence
TAAATGATGCTTATTATATTAAATAAACAAGATAGTCCTGCAGGTCTCACGTTTTAAGAATAAGTCCTTGTGTGTCTTTCTACCCTCTTGTCTTTTTTAT
Downstream sequence
AGGGTGCAAGGACAGAGCTCTTAAAGTTCATTTCAGGCTCAAATGGATTATATAAATACATATCCACATAGACTTTTTATTTTCATCTTAAAGACACAAC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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