Basic Information
VIS ID
TVIS30000738
Fusion event
HIV-LOC100422382 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr11
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
114323996/114453274 (Hg38)
End
114323996/114453274 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA11G
Target gene
LOC100422382
Nearest miRNA
hsa-mir-10392/Upstream/1003186; hsa-let-7a-2/Downstream/4190726;
Nearest TSS
ENST00000527297/Upstream/4337; ENST00000389586/Downstream/76746;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/13410, chr11-CpG: 26/Downstream/507761
Nearby gene
REXO2(+2996) ;
Upstream sequence
GAGCAGCTTTTTGAGGAATGCAGGGCTGTCGTGGATACTTAACTTCCCTGGTTCCAGAGAGATTTTGTGGATCTGAGGACAGACTCCAGTAACTACCTAC
Downstream sequence
CTATTAGAGTCATGCAATGGAACAACTTCATCCAAGCTCTTGGAAAGACAAAGACAACTTTGTACAATGCCCTGTTGAAACACTCAAGTGAGAAGAAAGG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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