Basic Information
VIS ID
TVIS30000739
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
118206087/118335372 (Hg38)
End
118206087/118335372 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA11B
Nearest miRNA
hsa-mir-10392/Upstream/4885284; hsa-let-7a-2/Downstream/308628;
Nearest TSS
ENST00000527297/Upstream/23228; ENST00000528540/Downstream/5565;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/181893, chr11-CpG: 22/Downstream/24077
Nearby gene
CD3D(-3702) ;
Upstream sequence
aggcaacatagtgagatcccgtgtctacacaaaaataaaaatattcaggcatagtggcacatgtctgtagtgccagagctacttgagaagctgaggtggg
Downstream sequence
aggatcacttaagcccagaagttcgaggctgcagtgagctataatcatgccactgtacttcagcctgagtgacacagcaagaccttgcctctaaaaaacc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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