Basic Information
VIS ID
TVIS30000740
Fusion event
HIV-LOC105369612 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
4296984/4187818 (Hg38)
End
4296984/4187818 (Hg38)
Location type
Intronic
Target gene
LOC105369612
Nearest miRNA
hsa-mir-3649/Upstream/2527438; hsa-let-7i/Downstream/2775881;
Nearest TSS
ENST00000382841/Upstream/161833; ENST00000541542/Downstream/85954;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/22493, chr12-CpG: 38/Downstream/55938
Nearby gene
CCND2(+85918) ;
Upstream sequence
atagtatgcttggtctattaaaaactgtatagcagctttttgtcctgattcagaaaaattgctaagataaataaaaaagacaaggtacagaacaatgtat
Downstream sequence
ataatatgctaccacttgtataaaatatattgtgtataaatgcatGGGGGGGTGTGTGTGTGTATTAAGCAGCTGGTAACTGTGGTTGCCTCTGAAGAAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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