Basic Information
VIS ID
TVIS30000744
Fusion event
HIV-NEMP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr12
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
57464338/57070555 (Hg38)
End
57464338/57070555 (Hg38)
Orient
+
Location type
Intronic
Target gene
NEMP1
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-mir-192-5p ; hsa-mir-24-3p ; hsa-let-7d-5p ; hsa-mir-93-3p ; hsa-mir-155-5p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1244-3/Upstream/2733241; hsa-let-7i/Downstream/123949;
Nearest TSS
ENST00000382841/Upstream/19357; ENST00000555857/Downstream/8208;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/63867, chr12-CpG: 29/Downstream/7936
Upstream sequence
GAGGTACTCAGAATTTCCTGAGGTGGAGTTTCAATTCTAGGCCTGTCTGATAGGGGTGAAGTCTCCATGAACTGTTTAGAGCAGTGGTATACTCAGGGTT
Downstream sequence
ATAATCAGAACCCAACTGGAGCTGTCTTAGGCTGACTTCTCAGTCTCACTAATTATACCCTTCAGAACTCAGTCCTTATCACTACAGAATCCATCAGAAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate