VISDB Viral Integration Site DataBase

VIS ID

TVIS30000745

Fusion event

HIV-GNPTAB integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr12

Cytoband

q23.2

Reference genome

Start

End

102182824/101789046 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-615-3p ; hsa-mir-548aw ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-5093 ; hsa-mir-4668-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3646 ; hsa-mir-606 ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-5582-3p ; hsa-mir-548c-3p ; hsa-mir-1247-3p ; hsa-mir-25-5p ; hsa-mir-3160-3p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-3065-5p ; hsa-mir-3129-3p ; hsa-mir-3529-3p ; hsa-mir-3613-3p ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-5571-5p ; hsa-mir-5583-5p ; hsa-mir-616-5p

Nearest miRNA

hsa-let-7i/Upstream/1599097; hsa-mir-1178/Downstream/2141379;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/49409, chr12-CpG: 49/Downstream/41475

Upstream sequence

AATAAAATGACCAATCTCATATATTAAATAAAAAGTACCAAAGTTTCTAATTCCATAGTCTGTAATTTATTCCTAAAAGGCATAAAGGGAGTATACTTTT

Downstream sequence

TACTGCCGTTTTCAAATGGAAACAAGTCTGTGGGCCTATTATATTTTTCAAGGGAAGAATCTGTCTTACTGTGGAGATATTTTTCATAATAAACACTTAT