Basic Information
VIS ID
TVIS30000750
Fusion event
HIV-PAN3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
28834577/28260440 (Hg38)
End
28834577/28260440 (Hg38)
Orient
+
Location type
Intronic
Target gene
PAN3
miRNAs that regulate target gene
hsa-mir-148a-3p ; hsa-mir-21-5p
Nearest miRNA
hsa-mir-2276/Upstream/4097936; hsa-mir-1267/Downstream/11403594;
Nearest TSS
ENST00000623511/Upstream/20883; ENST00000380842/Downstream/47994;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/121124, chr13-CpG: 205/Downstream/233211
Upstream sequence
ccgagattgcgccactgaactccagcctgggcaacagagcaagactccatctgaaaaaaagaaagaaaaaTGAGTGATTACATTTACCCCCTTCCTACCT
Downstream sequence
TTTTAGGTGTTTCCAAACTATCATATTTATCCTCCAACTGCACCTCACGTTGCTTATATGCAACCGAAAGCAAACGCACCTTCCTTCTTCATGGCTGATG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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